Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLA-----FNPAFPINTLTLMR--GAQGYLGGEGFQPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGF---DPDEFLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFV----GDQLFFGQDRLDFVAEVLAG
1R4W Chain:A ((8-210))
----LELFYDVLSPYSWLGFEVLCRYQHLWNIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGE
General information:
TITO was launched using:
RESULT:
Template:
1R4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135616 for 1496 contacts (-90.7/contact) +
2D Compatibility (PS) -20042 + (NN) -4893 + (LL) 364
1D Compatibility (HY) -16000 + (ID) 2650
Total energy: -178837.0 ( -119.54 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_1R4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R4W-query.scw
PDB file :
Tito_Scwrl_1R4W.pdb
: