Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METPAMFIKRCSRSIFLQVVIGLVIGVICGVGIPD------LAVQMKPLGDGFIKLIKMLIALIVFCVVVNGISGAGDLKKVGRIGLKSVIYFEILTTIALVLGLVVAYSLGLGSGANIHLNELPAGDVALYTGRTQEIHGP-VAFLMGLIPTSVFSAFAENDILQVLLFSVLFGSALNL--------VGEQASGVARLINEFSHIVFRIMGMIVRLAPLGVFGAVAFTTARYGVDSLSHLGALVLVFYATCLVFVMAVLGSVLRLSGVRMLPFLRYFREELLIVMGTASSDAVLPQVMRKLEHMGIRSSTVGLVIPTGYSFNLDGFSIYLTLAVVFIAHVTGTPLAMTDLITILLVSLVTSKGAHGIPGSALVILAATLTAVPAIPV------AGLVLVLSVDWFMGIGRALTNLIGNCVATVTIARWENDIDMPRAQAILDGRLEAPAKADGEPLKRSAVAGEGKLHG |
| 4OYF Chain:A ((9-416)) | -----------EYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISP-ARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG--IHL--------AVGGQ--------LVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSV-GLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -467384 for 3358 contacts (-139.2/contact) +
2D Compatibility (PS) -38589 + (NN) -16724 + (LL) 3488
1D Compatibility (HY) -39200 + (ID) 5600
Total energy: -564009.0 ( -167.96 by residue)
QMean score : 0.366
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