Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRP--S-E--V---PGVRTLTLERWPFSAPFRVKG--KEIQILRIDRVEITP
1WMI Chain:A ((3-88))
YRVKIHKQVVKALQSLPK------------AHYRRFLEFRDILEYE--PVPREKFDVIKLEGTGDLDLYRARL-G-DYRVIYSVNWKDKVIKILKLKPRGRA-
General information:
TITO was launched using:
RESULT:
Template:
1WMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21246 for 473 contacts (-44.9/contact) +
2D Compatibility (PS) -7881 + (NN) 1216 + (LL) 1260
1D Compatibility (HY) -4400 + (ID) 500
Total energy: -31551.0 ( -66.70 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1WMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WMI-query.scw
PDB file :
Tito_Scwrl_1WMI.pdb
: