Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHQRIASIGLGLTLALGGSAQAAGQLNVVSWSGYFSPQLLEKFEKESGIRVTVDSYDSNETLLAKLKQGGAGYDVAIPSQQFVPILVKEALLERFDPAAEPYYANLLDNLKK--PAWDPEGAYSVPFIWGTTSVVLDGARYA------GPADSYAVLYQPP--EELRGR-INMFDSVSEVVDMASLYLGI-PLCSADPKQMQRVLELLKAQKPFVKTYSSKAGSIRENLAAGEVDMSMFWGGS----SMRARELKP--SLKYLYPKEGVLAWVDNLVIPRGSRNPDNARRFIAFLAQPENAALTQNFLKHQSPVKGVEPYLDASLKDAPELHVPAGTRV-VFSQTCGEDAI-RLADRLWTNLMR |
| 4JDF Chain:A ((7-341)) | -------------------------LHIYNWTEYIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSAYFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDDPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHS--SQYINDLANGDICVAIGWAGSVWQASNRAKEAKNGVNVSFSIPKEGAMAWFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTQKVQDPKIDRVRTRAWTKVKS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130262 for 2552 contacts (-51.0/contact) +
2D Compatibility (PS) -34227 + (NN) -22559 + (LL) 1888
1D Compatibility (HY) -19600 + (ID) 4700
Total energy: -209460.0 ( -82.08 by residue)
QMean score : 0.588
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