Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFL-GLSLGGIVGQWLALHAPQRIERLVLANTSAWL-GPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLE----RAEP-VVERFRAMLMATNRHGL-AGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLP-AVHLSNVEFPQAFEGAVLSFLGAA |
| 4UHF Chain:A ((6-268)) | --KITTTATPGEIELAFEDTGTGLPVLLVHGFPLDRT--MWKAQREELCDEFRVIVPDLRGFGESQVIPGVATMEAMADDLAGLCNHLGLTGKIVLGGLSMGGYVAFAFARKYRDRLAGLILCDTRARPDSPEAKEN----RRRVAERVRREGPGFIAEEMIPRLCCESTFRNHPEVIEKIRQMILSAPPEGVAAAALGMAERPDSTDLLPALSCPTLVLVGQFDAISPPEEMEAMARTIPQSQFVVIPDAGHLPPMEQPERVTQAIREWLRKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UHF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159219 for 2267 contacts (-70.2/contact) +
2D Compatibility (PS) -26551 + (NN) -3570 + (LL) 808
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -208782.0 ( -92.10 by residue)
QMean score : 0.435
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