Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTVIPPSLLDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLDLDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVSREAVACA
1V9A Chain:A ((1-225))
-----------------GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDERVLALAP--GEKVYVGK------K-QEEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLA----SGLPLTHRGLAHGFAAVSGVLEGGGYPDLR--PFAR-VPTLVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTPKERRVHARLEEVA--EGKVEVRPPALWILGEVVRVF-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1V9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195135 for 1839 contacts (-106.1/contact) +
2D Compatibility (PS) -24500 + (NN) -12334 + (LL) 3116
1D Compatibility (HY) -24400 + (ID) 5150
Total energy: -258403.0 ( -140.51 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_1V9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9A-query.scw
PDB file :
Tito_Scwrl_1V9A.pdb
: