Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPYALLSLLATGTLLAQGAWAEDPEVLFKNKGCVACHAIDTKMVGPAYKDVAAKFAGQAGAEAELAQRIKNGSQGVWGPIPMPPNAVSDDEAQTLAKWVLSQK
1YNR Chain:A ((2-80))
-------------------------EQLAKQKGCMACHDLKAKKVGPAYADVAKKYAGRKDAVDYLAGKIKKGGSGVWGSVPMPPQNVTDAEAKQLAQWILSIK
General information:
TITO was launched using:
RESULT:
Template:
1YNR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19765 for 526 contacts (-37.6/contact) +
2D Compatibility (PS) -8674 + (NN) -6490 + (LL) 1896
1D Compatibility (HY) -6800 + (ID) 2250
Total energy: -42083.0 ( -80.01 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_1YNR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YNR-query.scw
PDB file :
Tito_Scwrl_1YNR.pdb
: