Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSLRFALTPGEPAGIGPDLCLL-LARS---AQPHPLIAIASRTLLQERAGQL-GLAIDLKDVSPAAWPERPAKAGQLYVWDTPLAAPVRP-GQLDRANAAYVLETLTRAGQGCLDGHFAGMITAPVHKGVINEAGIPFSGHTEFLADLTHTAQVVMMLATRGLRVALATTHLPLREVADAISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGR-EEIEVIEPCLERLRGEGLDLIGPLPADTLFTPKHLEHCDAVLAMYHDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALDLAGSGRIDSGSLQVALETAYQMAASRC |
4JQP Chain:A ((18-342)) | ----IGITMGDAAGVGAEVVVKSLAHASVYAQCRPLVIGDAKRL--ERANQIVGGEMKIRRIEDAS--EARYEQGTIDCIDLGLIPDDLPFGQLSAIAGDAAYQYIKRAVELAQSGKIDAICTAPLNKEALHAGGHKYPGHTEMLAHLTGVDEVSMMLVAPQLRVIHVTTHIGIIDAIRKIEPGLVQRTIERGNATLV-KAGIERPRIGVCGINPHAGENGLFGYGEEEEKIIPAVTLLQERGLDVTGPLPADTLFFRAGRGDFDLVVAMYHDQGHGPVKVLGLEAGVNVTVGLEVIRTSVDHGTAFDIAGKGVVDEGSMLEALRQGAELATRR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JQP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -232767 for 2822 contacts (-82.5/contact) +
2D Compatibility (PS) -34468 + (NN) -20312 + (LL) 748
1D Compatibility (HY) -19200 + (ID) 6500
Total energy: -312499.0 ( -110.74 by residue)
QMean score : 0.486
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