Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR
1RUN Chain:A ((11-209))
------------LEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG--QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR
General information:
TITO was launched using:
RESULT:
Template:
1RUN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137547 for 1404 contacts (-98.0/contact) +
2D Compatibility (PS) -21293 + (NN) -3370 + (LL) 1244
1D Compatibility (HY) -24400 + (ID) 6750
Total energy: -192116.0 ( -136.83 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_1RUN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RUN-query.scw
PDB file :
Tito_Scwrl_1RUN.pdb
: