Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAGHVVFSQVSMSHPINLCLAELDRAAIGRLWAPVDAFYMDHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWSEVEHEFR
2KHZ Chain:A ((9-111))
PCSVYFCGSIRGGRED-----QALYARIVSRLRRYGKVLTEHVADAEL-EPLG-E-EAAGGDQFIHEQDLNWLQQADVVVAE-VTQ--PSLGVGYELGRAVALGKPILCLFRPQSGRV
General information:
TITO was launched using:
RESULT:
Template:
2KHZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80192 for 763 contacts (-105.1/contact) +
2D Compatibility (PS) -11065 + (NN) -2276 + (LL) 1412
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -95121.0 ( -124.67 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2KHZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KHZ-query.scw
PDB file :
Tito_Scwrl_2KHZ.pdb
: