Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLHTNHGVITLKLDEEKAPETAANFKEYVKSGHYDNTVFHRVINNFMIQGGGFEPGMKQKPTRAPIKNEANNGLTNKVGSIAMARTMDPHSASAQFFINVADNDFLNHTAPTTQGWGYAVFGEVVEGMDVVNKIKGVATTMRSGHQDVPAEDVIIEKAEIVEE
1VAI Chain:A ((7-165))
-VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDH---GQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP-
General information:
TITO was launched using:
RESULT:
Template:
1VAI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55469 for 1296 contacts (-42.8/contact) +
2D Compatibility (PS) -16924 + (NN) -8970 + (LL) 368
1D Compatibility (HY) -14800 + (ID) 4450
Total energy: -100245.0 ( -77.35 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_1VAI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VAI-query.scw
PDB file :
Tito_Scwrl_1VAI.pdb
: