Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
3VPJ Chain:E ((21-168))
--------------------DCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQ----
General information:
TITO was launched using:
RESULT:
Template:
3VPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73166 for 1079 contacts (-67.8/contact) +
2D Compatibility (PS) -15911 + (NN) -11065 + (LL) 2468
1D Compatibility (HY) -18400 + (ID) 7400
Total energy: -123474.0 ( -114.43 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_3VPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VPJ-query.scw
PDB file :
Tito_Scwrl_3VPJ.pdb
: