Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQVAKRAMTDTPDDRTGEASGLSKRQAFHRQHRQRAEEEARRLLDARAEQGGRWLDWVAGQLYLLRPPEYAAMVRRELQRLSGD
3WDN Chain:A ((111-124))
-----------------------------------------------------------------MSEEAYEKYIKSIEE-----
General information:
TITO was launched using:
RESULT:
Template:
3WDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1952 for 53 contacts (-36.8/contact) +
2D Compatibility (PS) -1371 + (NN) 748 + (LL) 5180
1D Compatibility (HY) -1200 + (ID) 50
Total energy: 1355.0 ( 25.57 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_3WDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WDN-query.scw
PDB file :
Tito_Scwrl_3WDN.pdb
: