Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLIKTILSTNAGAGLAILRIVTGLTLMSHGS-QKLFGMFGGAGLNGMAQWFES-IGLTPGYLLATLAGSAEFFGGLALVIGLLVRPASVVVGFT-MIVAIFSVHIGNGFF--ITDNGYE-YALTLLMISVALLIDGAGKFSLDGKLSR----
3MAH Chain:A ((7-151))
-----DCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEP------VDMVATSEVGVSLTIDNDKN----LPDIVRALSDIGDVTVDKDMVIICIVGVGFEARIINALKGVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFN
General information:
TITO was launched using:
RESULT:
Template:
3MAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109666 for 856 contacts (-128.1/contact) +
2D Compatibility (PS) -13745 + (NN) -2620 + (LL) 876
1D Compatibility (HY) -8800 + (ID) 1100
Total energy: -135055.0 ( -157.77 by residue)
QMean score : 0.110
(partial model without unconserved sides chains):
PDB file :
Tito_3MAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MAH-query.scw
PDB file :
Tito_Scwrl_3MAH.pdb
: