Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEPNLRGNGKVALVTGAARGIGLGISAWLIAEGWQVV-LADNDRERGARVAEALGEHAWFVAMDVAQEGQVAMSVAEVLGQFGRLDGLVCNAAIANPRNTPLEALSLGEWTRTLAVNLTGPMLLAKYCTPYL-RAHNGAIVNIASTRAHQSEPDSEAYAASKGGLLALTHALAASLGPDIRVNALSPGWIDT---REAAEREA--------APLTELDHDQHLVGRVGTVEDVASLVAWLLSEDAGFVTGQEFLVDGGMTRKMIYLD
2DTX Chain:A ((9-247))
----------KVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP------GEAKYDH---IECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIES--YGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGH-EHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGLS-------
General information:
TITO was launched using:
RESULT:
Template:
2DTX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141400 for 1948 contacts (-72.6/contact) +
2D Compatibility (PS) -24232 + (NN) -8480 + (LL) 1700
1D Compatibility (HY) -19200 + (ID) 4450
Total energy: -196062.0 ( -100.65 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2DTX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DTX-query.scw
PDB file :
Tito_Scwrl_2DTX.pdb
: