Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGAVPMLAIDGPSGAGKGTVAGLLARRLGWNLLDSGALYRLLAFAAVNHGVDLTNEEALKVLAAHLDVQFVAADGSHGQRIILEGEEVTDVIRTEQVGAGASQVAALPAVRDALLQRQRAFREAPGLVADGRDMGTVVFPDAPLKIFLTASAEERARRRYLQLKAKGADVDQSALLEEIRERDERDSQRAVAPLKPADDAILLDSTEMSIEAVVETIIRHCERQGWDV
2FEM Chain:A ((3-223))
--AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGN--LEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIK-------------LVPAADALVLDSTTLSIEQVIEKALQYARQK----
General information:
TITO was launched using:
RESULT:
Template:
2FEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132312 for 1644 contacts (-80.5/contact) +
2D Compatibility (PS) -23058 + (NN) -18071 + (LL) 888
1D Compatibility (HY) -22000 + (ID) 6250
Total energy: -200803.0 ( -122.14 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_2FEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FEM-query.scw
PDB file :
Tito_Scwrl_2FEM.pdb
: