Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
2JDN Chain:A ((2-115))
-ATQGVFTLPANTRFGVTAFANASGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG
General information:
TITO was launched using:
RESULT:
Template:
2JDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44827 for 854 contacts (-52.5/contact) +
2D Compatibility (PS) -13177 + (NN) -12019 + (LL) 208
1D Compatibility (HY) -14000 + (ID) 5650
Total energy: -89465.0 ( -104.76 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_2JDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JDN-query.scw
PDB file :
Tito_Scwrl_2JDN.pdb
: