Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASHELDYRILGESMQTVEIELDPGETVIAEAGAMNYMTGDIRFTARMGDGSDGSLLGKLWSAGKRKLGGESVFMTHFTNEGQGKQHVAFAAPYPGSVVAVDLDDVGG-RLFCQKDSFLCAAYGTRVGIAFTK------RLGAGFFGGEGFILQKLE--GDGLVFVH--AGGTLIRRQLNGETLRVDTGCLVAFTDGIDYDVQLAGGLKSMLFGGE-GLLLTTLKGSGTVWLQSLPFSRLAGRIYDATFRAREEVRTNNG
1PG6 Chain:A ((13-164))
-------------------------------------------------------------------------------------MRFTIDQNMQFPLVEIDLEH--GGSVYLQQGSMVYHTENVTLNTKLNGLGKLVGAIGRSMVSGESMFITQAMSNGDGKLALAPNTPGQIVALELGEKQYRLNDGAFLALDGSAQYKMERQN-IG-------GGLFVMTTEGLGTLLANSFG------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94943 for 885 contacts (-107.3/contact) +
2D Compatibility (PS) -13628 + (NN) -2544 + (LL) 6176
1D Compatibility (HY) -12000 + (ID) 1250
Total energy: -118189.0 ( -133.55 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1PG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PG6-query.scw
PDB file :
Tito_Scwrl_1PG6.pdb
: