Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFERPILITGGAGFIGSHLTDALLARGYRVRVLDNLSTGKRDNLPLDDE-----------RVELLEGDAADAATLAAALKGCAAVAHLAAVASVQASVDDPVATHQSNFIATLNLCEAMREQGVKRVVFASSAAVYGQNGEGTAIDEDTPKSPLTPYASDKLASEYYLDFYRRQHGLEPAIFRFFNVYGPRQDPSSPYSGVISIFTERALKGTPITVFGDGEQTRDFIYVADLVDF-LVQALEATAVEPGAVNVGLNRSISLKQLLAEIGQVLGGLPPVTHADA-----RAGDIRHSRANNERLLRRFRFDQPTPMGVGLARLLGR |
| 3RUD Chain:A ((26-328)) | ---KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNL---DEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENI-GNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELS---GYIYDELNLIHHI--KYREFRSGDVRHSQADVTKAIDLLKY---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RUD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138731 for 2387 contacts (-58.1/contact) +
2D Compatibility (PS) -30302 + (NN) -11855 + (LL) 1356
1D Compatibility (HY) -24000 + (ID) 5150
Total energy: -208682.0 ( -87.42 by residue)
QMean score : 0.494
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