Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGQRYRETPLDIERLRRLNRATVERYMAMKGAERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAEWLERCFPDWEWHNVRIFETEDPNHFWVECDGRGKALVPGYPQGYCENHYIHSFELENGRIKRNREFMNPIQKLRALGIAVPQIKRDGIPT
3JUN Chain:A ((40-182))
----------------RQHNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDPNWFWVECRGEGAIVFPGYPRGQYRNHFLHSFRFENGLIKEQREFMNPCEQFRSLGIEVPEVRRDG---
General information:
TITO was launched using:
RESULT:
Template:
3JUN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34704 for 952 contacts (-36.5/contact) +
2D Compatibility (PS) -15400 + (NN) -4956 + (LL) 1184
1D Compatibility (HY) -13200 + (ID) 4000
Total energy: -71076.0 ( -74.66 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3JUN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JUN-query.scw
PDB file :
Tito_Scwrl_3JUN.pdb
: