Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTASEEKFTRQTLLDVQPLTPNLFTLRTSRDAGFRFRAGQFARLGVYKPSGSIVWRAYSMVSAPHDEFLDFFSIVVPDGEFTSELSRLREGDQLLVDRQAFGFLTLDRFVDGRDLWLLATGTGVAPFVSILQDFEVWERFESIKLVYSVRESKELAYRELIA-GLAEREYLAEHA-HKLQFIPVVTREQVPGCLNGRITTLIENGDLERAADL-ELTPEHSRVMLCGNPQMIEDTRAVLKARGMNLSL-TRRPGQVAVENYW
1A8P Chain:A ((9-252))
------------VLSVHHWNDTLFSFKTTRNPSLRFENGQFVMIGL-EVDGRPLMRAYSIASPNYEEHLEFFSIKVQNGPLTSRLQHLKEGDELMVSRKPTGTLVTSDLLPGKHLYMLSTGTGLAPFMSLIQDPEVYERFEKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVTRESFHN--QGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGSPSMLDESCEVLDGFGLKISPRMGEPGDYLIE---
General information:
TITO was launched using:
RESULT:
Template:
1A8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173760 for 1955 contacts (-88.9/contact) +
2D Compatibility (PS) -25614 + (NN) -6719 + (LL) 1596
1D Compatibility (HY) -25200 + (ID) 4850
Total energy: -234547.0 ( -119.97 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1A8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A8P-query.scw
PDB file :
Tito_Scwrl_1A8P.pdb
: