Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA
4QD3 Chain:A ((1-194))
MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA
General information:
TITO was launched using:
RESULT:
Template:
4QD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117354 for 1647 contacts (-71.3/contact) +
2D Compatibility (PS) -20871 + (NN) -9728 + (LL) 0
1D Compatibility (HY) -24800 + (ID) 9700
Total energy: -182453.0 ( -110.78 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_4QD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QD3-query.scw
PDB file :
Tito_Scwrl_4QD3.pdb
: