Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
4M5M Chain:A ((8-161))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
4M5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106356 for 1150 contacts (-92.5/contact) +
2D Compatibility (PS) -16021 + (NN) -6990 + (LL) 832
1D Compatibility (HY) -16800 + (ID) 3950
Total energy: -149285.0 ( -129.81 by residue)
QMean score : 0.667
(partial model without unconserved sides chains):
PDB file :
Tito_4M5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5M-query.scw
PDB file :
Tito_Scwrl_4M5M.pdb
: