Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDSPSNATVPCGFLLQGFSEFPHLRPVLFLLLLGVHLATLGGNLLILVAVASMPSRQPMLLFLCQLSAIELCYTLVVVPRSLVDLSTPGHRRGSPISFLSCAFQMQMFVALGGAECFLLAAMAYDRYVAICHPLRYAAVVTPGLCARLALACCLRGLAVSVGLTVAIFHLPFCGSRLLLHFFC-DITALLHLACTRSYADELPLLGACLVLLLLPSVLILASYGAIAAAL----RRLRC------------PKGRGKAASTCALHLAVTFLHYGCATFMYVR-PRASYSPRLDRTLALVYT-NVTPLLCPLIYSLRNRE--ITAALSRVLGRRRPGQAPGGDLREL------------------- |
| 4XNV Chain:A ((38-382)) | -------SFKCALTKTGF----QFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFG----DAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKKNAICISVLVWLIVVVAIS-----PILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYS-----MCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199695 for 2053 contacts (-97.3/contact) +
2D Compatibility (PS) -31226 + (NN) -4351 + (LL) 756
1D Compatibility (HY) -20800 + (ID) 3000
Total energy: -258316.0 ( -125.82 by residue)
QMean score : 0.122
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