Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MEELFCIGCGARIQTENKDAAGYTPRAALEKGLETGELYCQRCFRLRHYNEITDVHITDDEFLKLLHEVGDSDALVVNVIDI-----FDFNGSIIPGLSRFVAGNDVLLVG------NKKDILPKSVKDGKVTQWLTERAHEEGLRPVDVILTSAQNHHAIKDLIDTIEKYRHGRDVYVVGVTNVGKSTLINAIIREITGSRDVITTSRFPGTTLDKIEIPLDDGSYIFDTPGIIHRHQMAHYLTAKNLKYVSPKKEIKPKTYQLNSEQTLFLAGLARFDFISGQKQGFTAYFDNNLNLHRTKLVGA-DEFYTKHVGKLLTPPTGKEVSDFPKLVRHEFTIKNKMDIVYSGLGWIRVKSEAENPVVVAAWAPEGVAVVLRKALI |
| 4N5H Chain:X ((1-315)) | MADEEAMLAKVQASWAQTAARDKARYADERVPE------DVHWETEYRYEQSAD-------PQQTLNLYYPAKRRNATMPTVIDIHGGGWFYGDRNLNRNYCRYLASQGYAVMGMGYRLLPDVDLRGQIQDIFASLRWLSHFGPQRGFDLDHVLLTGDSAGGHLASLVACIQQSAELQELF--GVSRVNFNFTLVALV------------------------CPVAEPSKLPEAAG-----DMSDMAAFYLDKLSGGDQALVD---HLNFSQVVKGLDLPPFMLIGGQNDSF--------YLQSQALLKVFDANHVTYTTKLWPASAGPHL-------KHVFNVQH----------WEWPESIETNLEMLRTFDALSKQQDQAEENE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4N5H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -64559 for 2479 contacts (-26.0/contact) +
2D Compatibility (PS) -31163 + (NN) -2994 + (LL) 4332
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -107234.0 ( -43.26 by residue)
QMean score : 0.181
|
|
|