Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLLLLALPVLASRAYAAPAPGQALQRVGIVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLYY---QDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVNVSSHVHTVTLPPASE---TFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGN--TRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPKKP
4JZE Chain:H ((1-243))
------------------------------IVGGKVCPKGECPWQVLLLVNG---AQLCGGTLINTIWVVSAAHCFDK-IKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGA--TALELMVLNVPRLMTQDCLQQSRKVG----DSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEP
General information:
TITO was launched using:
RESULT:
Template:
4JZE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159635 for 1961 contacts (-81.4/contact) +
2D Compatibility (PS) -25475 + (NN) -10780 + (LL) 2632
1D Compatibility (HY) -19600 + (ID) 4250
Total energy: -217108.0 ( -110.71 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_4JZE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JZE-query.scw
PDB file :
Tito_Scwrl_4JZE.pdb
: