Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSIAKKCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
1QL3 Chain:A ((6-96))
----------------------------------------------------------------------GEKVFGKCKACHKLD--GNDGVGPHLNGVVGRTVAGV-DGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQQ--------
General information:
TITO was launched using:
RESULT:
Template:
1QL3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35424 for 615 contacts (-57.6/contact) +
2D Compatibility (PS) -9657 + (NN) -2983 + (LL) 6576
1D Compatibility (HY) -7600 + (ID) 2100
Total energy: -51188.0 ( -83.23 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_1QL3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QL3-query.scw
PDB file :
Tito_Scwrl_1QL3.pdb
: