Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSAWKPPFCHPSVLRLVNRALKQGSINKVIKIHSRASVILPNCLGLKFAVYNGKDYIPVSVNDQNMIGHKFGEFSPTRKFAGHNGDKKAVRR
2YKR Chain:S ((2-80))
--RSLKKGPFIDLHLLKKVEKAVES-GDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTD-EMVGHKLGEFAPTRTYR-----------
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48497 for 543 contacts (-89.3/contact) +
2D Compatibility (PS) -8737 + (NN) -4043 + (LL) 336
1D Compatibility (HY) -5600 + (ID) 1750
Total energy: -68291.0 ( -125.77 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: