Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRRITLNSNFMFGASDIKSLPNESAPEIAFAGRSNVGKSSLINLLINSKKAARVSSKPGCTRQINF--YSMYNDKFRLVDLPGYGCSHASKDETIQYLGLVEYYLIHRRNLRRVFVLIDSKVRLKEIDKDFIYWLTYNNINFDVVLTKIDKVDRENL--DAIIESTRKWINN-ESVSIRQISVRVKYEMTKVRDEFFKFTR
1MKY Chain:A ((178-353))
-----------------------TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIP------VDDEVFIDGRKYVFVDTAGL----------EKY--SNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA
General information:
TITO was launched using:
RESULT:
Template:
1MKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108404 for 1204 contacts (-90.0/contact) +
2D Compatibility (PS) -16436 + (NN) -2332 + (LL) 1968
1D Compatibility (HY) -4800 + (ID) 1650
Total energy: -131654.0 ( -109.35 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1MKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKY-query.scw
PDB file :
Tito_Scwrl_1MKY.pdb
: