Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLIMNLVTKSAINFTAPAVLPNGEIVDDFCLSEHIKGKYAILLFYPLDFTFVCPTELISLNNRISEFAKRDVEVIGISVDSKFSHYQWRKTSVSNGGIGEISYTLVSDIKKSISRDYGVLY-DDSIALRATFVIDDKFIVRHQSINDMPLGRNMDEFIRIVDAIKHNEEHGEVCPAGWKKGKPAMQASDEGVTDYLNSYSEEL
3SBC Chain:B ((25-213))
--------VQKQAPTFKKTAVVDG--VFDEVSLDKY-KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIKPTVEDSKEYFEAANK--
General information:
TITO was launched using:
RESULT:
Template:
3SBC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123964 for 1500 contacts (-82.6/contact) +
2D Compatibility (PS) -19864 + (NN) -3121 + (LL) 1112
1D Compatibility (HY) -17600 + (ID) 3650
Total energy: -167087.0 ( -111.39 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_3SBC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SBC-query.scw
PDB file :
Tito_Scwrl_3SBC.pdb
: