Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVST-NDITVVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDIYPGELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRIEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
1N2B Chain:B ((19-207))
---------DVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGA------YPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQR--------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N2B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116803 for 1372 contacts (-85.1/contact) +
2D Compatibility (PS) -19871 + (NN) -10087 + (LL) 9312
1D Compatibility (HY) -16000 + (ID) 4450
Total energy: -157899.0 ( -115.09 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1N2B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N2B-query.scw
PDB file :
Tito_Scwrl_1N2B.pdb
: