Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNQASHLDNFMNAKNPKSFFDNKGNTKFIAITSGKGGVGKSNISANLAYSLYKKGYKVGVFDADIGLANLDVIFGVKTHK--------NILHALKGEAKLQEIICEIEPGLCLIPGDSGEEILKYISGAEALDRFVDEEGVLS---SLDYIVIDTGAGIGATTQAFLNASDCVVIVTTPDPSAITDAYACIKINSKNKDELFLIANMVAQPKEGRATYERLFKVAKNNIASLELHYLGAIENSSLLKRYVRERKILRKIAPNDLFSQSIDQIASLLVSKLETGTLEIPKEGLKSFFKRLLKYLG |
3K9G Chain:A ((26-267)) | -------------------------KPKIITIASIKGGVGKSTSAIILATLLSK-NNKVLLIDMDTQ-ASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINVDNNLDLIP--SYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRT--------------------------HKTLFEILKTKDRFLGTISENKDYIKEYENILEIFLKKI------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3K9G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117817 for 1723 contacts (-68.4/contact) +
2D Compatibility (PS) -23487 + (NN) -11415 + (LL) 4676
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -165743.0 ( -96.19 by residue)
QMean score : 0.470
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