Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLVILSGAGISAESGIKTFRDAGGLWEGHDIMEVASPYGWKKNPQKVLDFYNQRRRQLFEVYPNKAHKALAELEKHY-QVNIITQNVDDLHERAGSSRILHLHGELLSVRSEKDPNLVYRWEK-----DLNLGDLAQDK-AQLRPDIVWFGEEVPL--LKEAVSLVKQVHLLIIIGTSLQVYPAASLYTHA-NKDALIYYIDPKAKNARLPQNVQCINENAVHAMQDLMPKLIEMASQEMLK
1YC5 Chain:A ((13-245))
SRLTVTLTGAGISTPSGIPDF------------QNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEK-KYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPF-DDIATLKYNMDVVEFARRVMEEGGI--------
General information:
TITO was launched using:
RESULT:
Template:
1YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89042 for 1742 contacts (-51.1/contact) +
2D Compatibility (PS) -22221 + (NN) -7607 + (LL) 1532
1D Compatibility (HY) -10800 + (ID) 3300
Total energy: -131438.0 ( -75.45 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YC5-query.scw
PDB file :
Tito_Scwrl_1YC5.pdb
: