Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKTFLECALKEDLGHGDLFERVLEKDFKATAFVRAKQEGVFSGEKYALELLQMTGIECVQNIKDKERFKPKDTLMEIRGDFSMLLKIERTLLNLLQHSSGIATLTSRFVEALNSPKV--RLLDTRKTRPLLRIFEKYSVLNGGASNHRLGLDDALMLKDTHLKHVKDLKSFLTHARKNLPFTAKIEIECESFEEAKNAMSAGADIVMCDNMSVGETKEIAAYREAHYPFVLLEASGNISLESINAYAKSGVDAISVGALIHQATFIDMHMKMA
2JBM Chain:B ((15-287))
VTLAALVDSWLREDC-PGLNYAALVSGAGPSQAALWAKSPGVLAGQPFFDAIFTQLNCQVSWFLPEGSKLVPVARVAEVRGPAHCLLLGERVALNTLARCSGIASAAAAAVEAARGAGWTGHVAGTRKTTPGFRLVEKYGLLVGGAASHRYDLGGLVMVKDNHVVAAGGVEKAVRAARQAADFALKVEVECSSLQEAVQAAEAGADLVLLDNFKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVISMGMLTQAAPALDFSLKLF
General information:
TITO was launched using:
RESULT:
Template:
2JBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141093 for 2262 contacts (-62.4/contact) +
2D Compatibility (PS) -29092 + (NN) -11572 + (LL) -172
1D Compatibility (HY) -17200 + (ID) 4250
Total energy: -203379.0 ( -89.91 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_2JBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JBM-query.scw
PDB file :
Tito_Scwrl_2JBM.pdb
: