Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKGYF-DFWNC-AIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLN-AGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLELV
1HD7 Chain:A ((62-317))
LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSE--------GLSHQYWSAP-----YSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA
General information:
TITO was launched using:
RESULT:
Template:
1HD7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152199 for 2000 contacts (-76.1/contact) +
2D Compatibility (PS) -25865 + (NN) -12437 + (LL) 932
1D Compatibility (HY) -24400 + (ID) 6100
Total energy: -220069.0 ( -110.03 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1HD7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HD7-query.scw
PDB file :
Tito_Scwrl_1HD7.pdb
: