Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDRAKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGKLSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF
4CV1 Chain:C ((28-281))
--VNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAH--LYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKL--MPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAI--
General information:
TITO was launched using:
RESULT:
Template:
4CV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180293 for 2163 contacts (-83.4/contact) +
2D Compatibility (PS) -27548 + (NN) -6846 + (LL) 436
1D Compatibility (HY) -24800 + (ID) 6850
Total energy: -245901.0 ( -113.69 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_4CV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CV1-query.scw
PDB file :
Tito_Scwrl_4CV1.pdb
: