Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYEYFPGFYDRLMDSE-LYDEWLEFSADFI---GDAPKKVLDLACGTAEFALRLSFSGHQVTGVDLSKE-MVAVAKEKVAAAEIDLPIIEQDMSKLALKQTFDVVTCFCDSLNYLETEQALEATIQAVSAHLEPNGLFLFDVHSVFKIEQGFKDYSYGDSDEEISTIWNSFPGEHPHSIEH-ELTFYILGEDDTYNRVDELHKERTYPIATYENLLKKFGFTKIDIYADFSHEKPNKTSERIFFAARK-- |
| 1Y8C Chain:A ((1-246)) | NCYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFE---DDLVSMYISFFVR-DGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLGG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Y8C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95203 for 1882 contacts (-50.6/contact) +
2D Compatibility (PS) -25691 + (NN) -10414 + (LL) 40
1D Compatibility (HY) -17200 + (ID) 3400
Total energy: -151868.0 ( -80.70 by residue)
QMean score : 0.444
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