Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3JWC Chain:B ((9-166))
-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIFDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEK-
General information:
TITO was launched using:
RESULT:
Template:
3JWC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89819 for 1144 contacts (-78.5/contact) +
2D Compatibility (PS) -17083 + (NN) -6588 + (LL) 128
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -135462.0 ( -118.41 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3JWC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JWC-query.scw
PDB file :
Tito_Scwrl_3JWC.pdb
: