Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VIFIEVMKERFGEF---EGETVWKWTMINDHDMRMSVLNYGAIVTSLETKDKFGDFANISLGFTNLDDYLAHSPYFGATLGPVAGRITNGQFSLDGKQFQLIQNEGSNHRHGGKFNFSK--KLWDVSVEKSLDQIVMTFEYCWADGENGYPGKIDAKMTYTLNNKNEWLVDYEARSNQPTIYNPSNHIYFNLSGEAGSTVLQHQLWVNSDSFLPIDEEFLPIGEKRLAENTIFDLRAGREVAEITQSQDQQVKLVGAGLDHTFILKHENGRPDAVLFDPKSGRRLEMETKADSVLIYTANSLDGSFEIDERAVPKYAGITMETQGLVDAINHEGFGDIVLRPEKPFTSRTAFRFTVES |
3IMH Chain:A ((3-330)) | ------LKTNFVKYERKDNKDLCEITLENDAGMAVKVLNYGATLEKVLLDG-----ENMILSLNSPEDYSKERNFLGGTVGRIAGRVRAGQWKHGNEIHQLPLNDGDNHIHGG---IGTDMHVWDFRPSCDSEHARVDLTLFDPDGNNDYPGNLKLHARYELDNENNLHYLLEAVSDKLTIFNPVNHTYFNLGER----AEDLNLQMNADYYLPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLR-NGLDHPFILNGN--NPAALLSS--NKHRLIVKTNAPALVLYAGNHFNHTG-IVN-NIGQYDGITFEAQCPPAEGNDLG--QITLLPFEKFKRTVDWKFE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IMH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131097 for 2812 contacts (-46.6/contact) +
2D Compatibility (PS) -34609 + (NN) -8635 + (LL) 1152
1D Compatibility (HY) -19600 + (ID) 5300
Total energy: -198089.0 ( -70.44 by residue)
QMean score : 0.461
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