Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGIGGGYVTSWVGDPGAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGKKIFGRAIASAKLA
4RLJ Chain:B ((6-147))
MALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGIGGGYVTSWVGDPGAVTEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGKKIFGRAIASAKLA
General information:
TITO was launched using:
RESULT:
Template:
4RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84889 for 1054 contacts (-80.5/contact) +
2D Compatibility (PS) -14839 + (NN) -1547 + (LL) 0
1D Compatibility (HY) -18800 + (ID) 7100
Total energy: -127175.0 ( -120.66 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_4RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RLJ-query.scw
PDB file :
Tito_Scwrl_4RLJ.pdb
: