Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVL-------------HDKFPDLNETKAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFDEDA-PVVRVSALKA-----LEGDAKWVASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQV---VTKPGTTTPHTEFEGQVYILSKDEGGR--HTPFFNNYRPQFYFRTTDV-------TGVVTLPEGTEMVMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK |
| 3VMF Chain:A ((7-430)) | ---------KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWYNG-PTLVEALDQLQP-PAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFM---PPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKAKLDPKTGQV-VEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97931 for 3136 contacts (-31.2/contact) +
2D Compatibility (PS) -40377 + (NN) -16920 + (LL) 1500
1D Compatibility (HY) -29200 + (ID) 7300
Total energy: -190228.0 ( -60.66 by residue)
QMean score : 0.431
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