Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFD--SKVAIVTGAAQGIGQAYAQALAREGASVVVADINADGAAAVAKQIVADGGT-AIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAWLYS----NFYGLAKVGVNGLTQQLARELGGMKIRINAIAPGPIDTEATRTV-TPAELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
1VL8 Chain:B ((16-263))
VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAE---EFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG-----
General information:
TITO was launched using:
RESULT:
Template:
1VL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163908 for 2071 contacts (-79.1/contact) +
2D Compatibility (PS) -26064 + (NN) -11560 + (LL) 1128
1D Compatibility (HY) -16800 + (ID) 4400
Total energy: -221604.0 ( -107.00 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1VL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL8-query.scw
PDB file :
Tito_Scwrl_1VL8.pdb
: