Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYD--RVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
4Z0J Chain:B ((2-236))
-ARKYFVAANWKCN----GTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQS---KFSTGIQNVSKFGNGAYTGEVSAEIAKDLNIEYVIIGHSERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVD--LIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGS------SSLIQQEDIDGFLVGNASL------------------
General information:
TITO was launched using:
RESULT:
Template:
4Z0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106835 for 1825 contacts (-58.5/contact) +
2D Compatibility (PS) -25767 + (NN) -18333 + (LL) 1776
1D Compatibility (HY) -18800 + (ID) 4200
Total energy: -172159.0 ( -94.33 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_4Z0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Z0J-query.scw
PDB file :
Tito_Scwrl_4Z0J.pdb
: