Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDAL
2GNK Chain:A ((1-112))
MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGR-----------------LPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL
General information:
TITO was launched using:
RESULT:
Template:
2GNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55030 for 623 contacts (-88.3/contact) +
2D Compatibility (PS) -10258 + (NN) -829 + (LL) 984
1D Compatibility (HY) -11200 + (ID) 2350
Total energy: -78683.0 ( -126.30 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_2GNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GNK-query.scw
PDB file :
Tito_Scwrl_2GNK.pdb
: