Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGH-GLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIA-GVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLNTERT
3ND7 Chain:B ((5-158))
---ALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK------
General information:
TITO was launched using:
RESULT:
Template:
3ND7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110476 for 1078 contacts (-102.5/contact) +
2D Compatibility (PS) -16078 + (NN) -8059 + (LL) 360
1D Compatibility (HY) -14800 + (ID) 2950
Total energy: -152003.0 ( -141.00 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3ND7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND7-query.scw
PDB file :
Tito_Scwrl_3ND7.pdb
: