Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREE-FDKPYMKQLGEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKELNRDLN-IPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAY-------RGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
2J8X Chain:A ((3-231))
------NLLLPDLWLDFLQLSPIFQRKLAAVIACVRRLR-TQATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL---
General information:
TITO was launched using:
RESULT:
Template:
2J8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90376 for 1771 contacts (-51.0/contact) +
2D Compatibility (PS) -24081 + (NN) -13368 + (LL) -84
1D Compatibility (HY) -23600 + (ID) 4950
Total energy: -156459.0 ( -88.35 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2J8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J8X-query.scw
PDB file :
Tito_Scwrl_2J8X.pdb
: