Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADLKIRNLQKGFD-GQAII---KGIDLDVRDREFVVFVGPSGCGKSTLLRLIAGLEEASGGSIALDGTDITD------TPPAKRDLAMVFQTYALYPHMTVRRNLSFAL------DLAGVDKREVAAKVDAAARILELQALLERKPRQLSGGQRQRVAIGRAIVRNPKIFLFDEPLSNLDAALRVQMRLELARLHQELAATMIYVTHDQVEAMTLADKVVVLNGGRVEQVGSPLELYHHPANLFVAGFLGTPKMGFLRGHLSRNQGERCEVALECGARVGLPLCAGELATGSPVTLGIRPEHLNIARPGHAFQGLLRVAADVSERLGSDSFCHVRADSGEMLTLRVRGDFAPDYGAPLELGFDPEHCHLFDSNGQALDKRLQQAA |
1L2T Chain:B ((2-225)) | ---IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA--NHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD-INVARFGERIIYLKDGEVER------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1L2T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126854 for 1675 contacts (-75.7/contact) +
2D Compatibility (PS) -22585 + (NN) -9109 + (LL) 8704
1D Compatibility (HY) -16000 + (ID) 3750
Total energy: -169594.0 ( -101.25 by residue)
QMean score : 0.574
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