Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVYAIIGGTGLTQLEGLTLSESLPIETPYGAPSAPLQRGRYAGREVLFLARHGHPHRFPPHQVNYRANLWALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGREHTYFAGD---IEHVTHIDFSHPYDEPLRQRLIEALRALGLAHSSHGVYACTQGPRLETVAEIARLERDGNDIVGMTGMPEAALARELDLPYACLALVVNPAAGKSAGIITMAEIEQALHDGIGKVREVLARVLAG
1CB0 Chain:A ((10-256))
-VKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCW----AVSVDRVLKTLKENANKAKSLLLTTIP-
General information:
TITO was launched using:
RESULT:
Template:
1CB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172440 for 2045 contacts (-84.3/contact) +
2D Compatibility (PS) -26143 + (NN) -14168 + (LL) 44
1D Compatibility (HY) -14800 + (ID) 3850
Total energy: -231357.0 ( -113.13 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_1CB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CB0-query.scw
PDB file :
Tito_Scwrl_1CB0.pdb
: