Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIM-DGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFS-SENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAE-LLQGCLVT-GDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
1JP3 Chain:A ((13-240))
LPAH-----GCRHVAII-MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSMELFVWALDSEVKSLHR---------------HNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQH--VCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE------------------
General information:
TITO was launched using:
RESULT:
Template:
1JP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103010 for 1590 contacts (-64.8/contact) +
2D Compatibility (PS) -23613 + (NN) -17206 + (LL) 3784
1D Compatibility (HY) -17600 + (ID) 5500
Total energy: -163145.0 ( -102.61 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1JP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JP3-query.scw
PDB file :
Tito_Scwrl_1JP3.pdb
: