Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDA----GVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
4JL5 Chain:B ((1-178))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNV---IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71882 for 1268 contacts (-56.7/contact) +
2D Compatibility (PS) -18951 + (NN) -7646 + (LL) 2424
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -118505.0 ( -93.46 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_4JL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JL5-query.scw
PDB file :
Tito_Scwrl_4JL5.pdb
: